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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
1
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
3
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
Transcription
Target of assay
10
histone
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
300
November, 2017
96
February, 2021
61
November, 2018
41
August, 2021
28
December, 2018
23
October, 2019
22
January, 2019
20
May, 2021
10
March, 2020
6
February, 2023
6
November, 2019
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
5
bam
2
bed narrowPeak
2
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
6
Homo sapiens
Biosample type
40
tissue
6
cell line
5
in vitro differentiated cells
Organ
6
epithelium
6
pancreas
Project
6
AMP
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
6
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
xls
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
6 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
cell line
EndoC_BH1
3
1
1
1
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