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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
Assay category
27
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
192
August, 2021
161
May, 2022
152
February, 2023
135
August, 2017
125
November, 2017
94
October, 2019
81
May, 2020
66
May, 2021
59
September, 2020
57
February, 2021
47
September, 2023
40
May, 2024
29
October, 2018
27
June, 2019
24
February, 2020
24
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
15
December, 2017
14
May, 2023
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
45
fastq
14
tsv
6
csv
5
txt
3
bam
3
tagAlign
Organism
57
Homo sapiens
Biosample type
45
primary cell
9
tissue
3
cell line
Organ
8
kidney
6
epithelium
6
pancreas
2
artery
2
blood vessel
2
heart
2
vasculature
1
liver
Project
45
HPAP
12
AMP
Genome assembly (visualization)
hg19
524
GRCh38
Lab
45
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
inconsistent ontology term
32
audit script error
files.file_type!
xls
organ_slims!
intestine
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
57 results
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Clear Filters
snATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
snDrop-seq
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
tissue
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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