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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
61
total RNA-seq
46
ATAC-seq
6
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
73
DNA binding
63
Transcription
52
DNA accessibility
Target of assay
48
histone
48
histone modification
30
broad histone mark
20
control
18
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
October, 2019
66
February, 2021
35
February, 2023
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
1
March, 2020
Available data
144
bam
116
bigWig
101
bed narrowPeak
64
tsv
51
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
Organism
189
Homo sapiens
Biosample type
121
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
290
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
189
AMP
Genome assembly (visualization)
159
GRCh38
124
hg19
Lab
189
AMP-T2D consortium
files.file_type!
xls
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
islet of Langerhans
4
pulmonary artery
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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