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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ATAC-seq
21
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
50
DNA accessibility
21
DNA binding
Target of assay
21
histone
21
histone modification
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
14
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
89
bam
72
bigWig
61
bed narrowPeak
58
tsv
11
bigBed narrowPeak
7
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
66
cell line
61
tissue
2
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
336
heart
275
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
115
GRCh38
80
hg19
Lab
129
AMP-T2D consortium
files.file_type!
xls
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
tibial artery
1
1
9
2
pulmonary artery
2
islet of Langerhans
1
pituitary gland
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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