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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
35
DNase-seq
Assay category
58
DNA binding
35
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
32
June, 2019
3
November, 2018
Available data
892
bam
846
bigWig
632
bed narrowPeak
465
fastq
452
bigBed narrowPeak
342
tsv
93
bed broadPeak
93
bigBed broadPeak
92
tagAlign
43
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
93
Homo sapiens
Biosample type
58
cell line
30
tissue
5
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
93
AMP
Genome assembly (visualization)
90
hg19
79
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
files.file_type!
xls
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
heart
18
heart left ventricle
3
coronary artery
2
liver
2
right atrium auricular region
2
+ See 3 more…
primary cell
cardiac fibroblast
3
hepatic stellate cell
1
hepatocyte
1
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