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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
24
total RNA-seq
13
ChIP-seq
6
DNase-seq
4
pCHi-C
1
RRBS
Assay category
35
DNA accessibility
24
Transcription
13
DNA binding
1
DNA methylation
Target of assay
27
histone
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
37
October, 2019
31
February, 2023
6
June, 2019
2
February, 2020
1
July, 2019
Available data
35
bed narrowPeak
24
bam
12
bigWig
10
tsv
7
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
77
Homo sapiens
Biosample type
73
tissue
4
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
296
heart
260
kidney
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
40
hg19
12
GRCh38
Lab
77
AMP-T2D consortium
files.file_type!
xls
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
tibial nerve
1
5
11
2
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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