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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
618
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
618
DNA binding
200
Transcription
73
DNA accessibility
8
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
152
histone modification
151
histone
125
control
82
recombinant protein
76
broad histone mark
75
narrow histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
76
October, 2019
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
34
June, 2019
10
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
February, 2020
2
March, 2020
Available data
795
bam
712
bigWig
533
bed narrowPeak
464
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
48
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
905
Homo sapiens
Biosample type
478
tissue
399
cell line
15
in vitro differentiated cells
13
primary cell
Organ
857
pancreas
787
liver
683
connective tissue
491
adipose tissue
436
epithelium
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
905
AMP
Genome assembly (visualization)
718
hg19
627
GRCh38
Lab
835
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
zippedFastqFolder
assay_title!
Hi-C
BIOSAMPLE
ASSAY
905 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
2
20
3
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
right lobe of liver
10
3
2
1
1
2
+ See 11 more…
cell line
HepG2
378
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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