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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
113
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
10
WGBS
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
10
DNA methylation
8
DNA accessibility
Date released
6
February, 2021
6
November, 2018
4
June, 2019
1
August, 2017
1
October, 2019
Available data
zippedFastqFolder
13
fastq
12
bam
12
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
11
tissue
6
primary cell
1
cell line
Organ
81
kidney
38
heart
37
limb
34
musculature of body
32
brain
25
epithelium
18
pancreas
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
12
AMP
6
HPAP
Genome assembly (visualization)
12
GRCh38
6
hg19
Lab
12
AMP-T2D consortium
6
Klaus Kaestner, Upenn
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
18 results
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Clear Filters
WGBS
DNase-seq
tissue
body of pancreas
2
4
pancreas
2
2
islet of Langerhans
1
primary cell
pancreatic alpha cell
6
cell line
Panc1
1
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