Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
237
total RNA-seq
159
ATAC-seq
131
single cell RNA-seq
35
snATAC-seq
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
6
WGBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
369
Transcription
266
DNA binding
220
DNA accessibility
16
DNA methylation
9
3D chromatin structure
Target of assay
228
histone
228
histone modification
118
broad histone mark
110
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
58
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
40
September, 2020
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
580
bigWig
572
bam
405
fastq
277
bed narrowPeak
255
tsv
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
895
Homo sapiens
Biosample type
2230
tissue
895
primary cell
654
cell line
297
in vitro differentiated cells
9
stem cell
Organ
326
epithelium
266
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
520
AMP
203
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
593
hg19
503
GRCh38
Lab
485
AMP-T2D consortium
238
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
files.file_type!
zippedFastqFolder
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
895 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 82 more…
See all biosamples
Download