Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ATAC-seq
293
ChIP-seq
245
total RNA-seq
193
single cell RNA-seq
55
pCHi-C
36
snATAC-seq
34
Hi-C
21
RRBS
10
MeRIP-seq
10
WGBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
36
DNA accessibility
Date released
February, 2021
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
zippedFastqFolder
1
bed bed3+
1
txt
Organism
35
Homo sapiens
Biosample type
28
tissue
8
primary cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
18
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
files.file_type!
zippedFastqFolder
bam
month_released!
February, 2021
BIOSAMPLE
ASSAY
36 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
primary cell
peripheral blood mononuclear cell
8
Download