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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
February, 2020
7
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
31
Homo sapiens
Biosample type
27
tissue
4
primary cell
Organ
210
kidney
179
heart
176
pancreas
127
epithelium
109
liver
93
bone element
89
connective tissue
53
eye
48
vasculature
47
adipose tissue
47
blood vessel
37
artery
37
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
limb
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
zippedFastqFolder
bam
month_released!
February, 2020
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
Ammon's horn
1
+ See 6 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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