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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
63
ChIP-seq
37
ATAC-seq
15
total RNA-seq
6
Hi-C
5
pCHi-C
4
RRBS
2
WGBS
Assay category
108
Transcription
63
DNA binding
37
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
29
broad histone mark
28
narrow histone mark
5
RNA binding protein
5
transcription factor
1
control
Date released
92
August, 2021
40
May, 2024
37
February, 2023
15
February, 2020
13
November, 2017
9
July, 2019
7
March, 2020
7
October, 2017
4
October, 2019
1
April, 2019
Available data
bam
446
bigWig
394
bed narrowPeak
221
bigBed narrowPeak
194
tsv
124
tagAlign
77
bed broadPeak
68
bigBed broadPeak
65
bed bed3+
21
fastq
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
hdf5
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
225
Homo sapiens
Biosample type
220
tissue
5
primary cell
Organ
210
kidney
182
heart
177
pancreas
127
epithelium
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
225
AMP
Genome assembly (visualization)
77
GRCh38
15
hg19
Lab
185
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
zippedFastqFolder
bam
BIOSAMPLE
ASSAY
225 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
+ See 30 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
choroid plexus epithelial cell
1
See all biosamples
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