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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
10
ChIP-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
12
Transcription
10
DNA binding
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
narrow histone mark
9
broad histone mark
1
control
Date released
12
February, 2020
6
October, 2017
5
July, 2019
4
November, 2017
2
March, 2020
1
February, 2023
1
October, 2019
Available data
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
31
Homo sapiens
Biosample type
27
tissue
4
primary cell
Organ
210
kidney
171
pancreas
166
heart
127
epithelium
100
liver
93
bone element
75
connective tissue
52
eye
51
vasculature
50
blood vessel
39
artery
38
adipose tissue
32
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
6
hg19
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
zippedFastqFolder
bam
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
brain
6
1
1
Ammon's horn
1
1
cingulate gyrus
2
layer of hippocampus
2
amygdala
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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