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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
2
WGBS
Assay category
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
35
February, 2023
5
March, 2020
4
July, 2019
1
April, 2019
1
October, 2019
Available data
191
bed narrowPeak
154
bigWig
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
86
Homo sapiens
Biosample type
85
tissue
1
primary cell
Organ
110
pancreas
97
kidney
89
bone element
86
heart
84
connective tissue
79
liver
72
epithelium
46
adipose tissue
42
vasculature
41
blood vessel
36
musculature of body
35
artery
35
eye
31
brain
11
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
46
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
zippedFastqFolder
bam
assay_slims!
Transcription
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
left cardiac atrium
40
coronary artery
35
heart left ventricle
1
1
1
1
2
heart right ventricle
1
1
heart
1
+ See 1 more…
primary cell
cardiac fibroblast
1
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