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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
total RNA-seq
85
ATAC-seq
44
single cell RNA-seq
33
snATAC-seq
6
WGBS
4
Hi-C
Assay category
185
Transcription
118
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
128
August, 2021
76
February, 2023
45
February, 2021
40
September, 2020
14
May, 2023
7
August, 2020
3
October, 2022
Available data
169
fastq
zippedFastqFolder
64
bed narrowPeak
64
xls
57
txt
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
313
Homo sapiens
Biosample type
171
primary cell
142
tissue
Organ
142
kidney
72
epithelium
72
pancreas
Project
171
HPAP
142
AMP
Genome assembly (visualization)
85
GRCh38
4
hg19
Lab
3910
AMP-T2D consortium
343
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
zippedFastqFolder
ibed
BIOSAMPLE
ASSAY
313 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
tissue
kidney
49
75
11
6
1
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