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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
WGBS
21
RRBS
1
DNAme array
Assay category
1871
DNA binding
1806
Transcription
691
DNA accessibility
56
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
27
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
1
May, 2021
Available data
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
21
fastq
18
bam
17
bigWig
6
tsv
Organism
56
Homo sapiens
Biosample type
38
tissue
17
primary cell
1
cell line
Organ
12
epithelium
12
pancreas
10
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
50
AMP
6
HPAP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
50
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
files.file_type!
zippedFastqFolder
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
56 results
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WGBS
RRBS
DNAme array
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 13 more…
primary cell
pancreatic alpha cell
6
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 7 more…
cell line
HepG2
1
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