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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
89
single cell RNA-seq
55
snATAC-seq
17
pCHi-C
11
ATAC-seq
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
192
Transcription
66
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
99
February, 2023
47
September, 2023
45
February, 2021
37
September, 2020
19
April, 2020
17
May, 2021
16
January, 2021
5
March, 2023
3
October, 2022
2
March, 2020
Available data
bigWig
186
bam
169
fastq
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
285
Homo sapiens
Biosample type
186
primary cell
95
tissue
7
cell line
2
stem cell
Organ
90
pancreas
62
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
161
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
161
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
zippedFastqFolder
bigWig
month_released!
August, 2018
award.project!
AMP
BIOSAMPLE
ASSAY
290 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
6
1
exocrine cell
39
pancreatic beta cell
11
1
peripheral blood mononuclear cell
8
+ See 17 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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