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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
2
pCHi-C
Assay category
7
DNA accessibility
Date released
4
February, 2021
3
February, 2023
2
March, 2020
Available data
3174
bam
2959
bigWig
1607
bed narrowPeak
1600
tsv
1358
fastq
832
bigBed narrowPeak
398
tagAlign
161
txt
zippedFastqFolder
135
bed broadPeak
98
bigBed broadPeak
86
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
9
in vitro differentiated cells
Organ
4
connective tissue
Project
9
AMP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
zippedFastqFolder
month_released!
June, 2019
BIOSAMPLE
ASSAY
9 results
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ATAC-seq
pCHi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiomyocytes (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
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