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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
27
bed narrowPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
55
Homo sapiens
Biosample type
54
tissue
1
primary cell
Organ
862
pancreas
789
liver
666
connective tissue
490
adipose tissue
424
epithelium
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
28
hg19
Lab
55
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
zippedFastqFolder
month_released!
June, 2019
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
gastric (mucosa of stomach)
1
primary cell
retinal pigment epithelial cell
1
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