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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
89
single cell RNA-seq
55
snATAC-seq
21
ATAC-seq
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
239
Transcription
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
99
February, 2023
47
September, 2023
45
February, 2021
45
May, 2020
40
September, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
169
fastq
zippedFastqFolder
60
bigWig
53
tsv
50
bam
4
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
328
Homo sapiens
Biosample type
225
primary cell
96
tissue
10
cell line
2
stem cell
Organ
105
pancreas
75
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
171
HPAP
91
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
61
GRCh38
53
hg19
Lab
171
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
files.file_type!
zippedFastqFolder
month_released!
May, 2021
award.project!
AMP
BIOSAMPLE
ASSAY
333 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
peripheral blood mononuclear cell
8
+ See 27 more…
tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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