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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
158
ChIP-seq
148
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
10
Hi-C
10
RRBS
6
WGBS
1
FAIRE-seq
1
pCHi-C
1
small RNA-seq
Assay category
327
Transcription
215
DNA accessibility
158
DNA binding
16
DNA methylation
10
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
458
bam
440
bigWig
409
fastq
216
tsv
168
bed narrowPeak
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
727
Homo sapiens
Biosample type
2249
tissue
727
primary cell
641
cell line
261
in vitro differentiated cells
10
stem cell
Organ
326
epithelium
266
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
pericardium
Project
502
AMP
171
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
442
hg19
385
GRCh38
Lab
502
AMP-T2D consortium
171
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
zippedFastqFolder
month_released!
May, 2021
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
727 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
Hi-C
RRBS
WGBS
FAIRE-seq
pCHi-C
small RNA-seq
primary cell
pancreatic alpha cell
52
13
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
21
13
10
12
1
exocrine cell
39
pancreatic ductal cell
4
13
4
10
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