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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
13
ATAC-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
80
DNA binding
65
Transcription
27
DNA methylation
15
DNA accessibility
8
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
161
bam
157
bigWig
72
bed narrowPeak
66
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
fastq
4
bed bed3+
4
hdf5
Organism
195
Homo sapiens
Biosample type
157
tissue
38
primary cell
Organ
82
heart
34
kidney
20
epithelium
18
brain
18
connective tissue
13
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
188
AMP
7
HPAP
Genome assembly (visualization)
156
hg19
150
GRCh38
Lab
188
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
1
2
4
kidney
23
1
1
heart right ventricle
13
2
heart
9
2
1
1
omental fat pad
4
1
+ See 26 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 22 more…
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