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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
total RNA-seq
38
ATAC-seq
24
ChIP-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
42
Transcription
39
DNA accessibility
24
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
zippedFastqFolder
63
bam
63
fastq
54
bed narrowPeak
51
bigWig
15
tsv
7
txt
1
bed bed3+
Organism
105
Homo sapiens
Biosample type
66
tissue
39
in vitro differentiated cells
Organ
40
liver
24
pancreas
13
embryo
2
musculature of body
Project
105
AMP
Genome assembly (visualization)
70
hg19
31
GRCh38
Lab
41
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
105 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
6
18
skeletal muscle tissue
1
1
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
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