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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1728
ChIP-seq
1135
total RNA-seq
486
ATAC-seq
310
single cell RNA-seq
202
DNase-seq
86
RNA microarray
63
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
21
WGBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
Date released
12
July, 2019
November, 2018
6
February, 2021
3
August, 2017
Available data
zippedFastqFolder
9
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
7
fastq
6
tsv
Organism
21
Homo sapiens
Biosample type
15
tissue
6
primary cell
Organ
8
heart
adipose tissue
6
connective tissue
6
epithelium
6
pancreas
4
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
15
AMP
6
HPAP
Genome assembly (visualization)
8
GRCh38
Lab
15
AMP-T2D consortium
6
Klaus Kaestner, Upenn
files.file_type!
zippedFastqFolder
organ_slims!
adipose tissue
month_released!
November, 2018
BIOSAMPLE
ASSAY
21 results
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WGBS
tissue
heart left ventricle
4
liver
3
aorta
2
heart right ventricle
2
heart
1
+ See 3 more…
primary cell
pancreatic alpha cell
6
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