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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
whole genome sequencing assay
Assay category
180
Transcription
13
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
314
May, 2020
306
February, 2021
266
May, 2021
215
August, 2017
212
August, 2021
168
July, 2018
140
February, 2023
124
October, 2019
93
November, 2017
89
July, 2019
60
March, 2020
49
April, 2018
47
September, 2023
40
September, 2020
28
May, 2022
27
September, 2018
24
November, 2019
23
February, 2018
23
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
November, 2018
14
May, 2023
14
November, 2020
13
October, 2018
11
October, 2017
10
December, 2019
9
January, 2019
8
June, 2019
7
August, 2020
7
January, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
123
tsv
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
212
Homo sapiens
Biosample type
164
tissue
30
cell line
17
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
18
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
adipose tissue
Project
212
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
124
AMP-T2D consortium
64
Katalin Susztak, Upenn
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
zippedFastqFolder
bed narrowPeak
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
212 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
4
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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