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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
43
ChIP-seq
25
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
whole genome sequencing assay
Assay category
123
Transcription
43
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
313
October, 2019
217
June, 2019
204
February, 2023
190
August, 2021
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
66
May, 2022
63
March, 2020
60
November, 2019
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
123
tsv
49
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
190
Homo sapiens
Biosample type
100
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
kidney
adipose tissue
Project
190
AMP
Genome assembly (visualization)
59
hg19
41
GRCh38
Lab
150
AMP-T2D consortium
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
adipose tissue
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
190 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 9 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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