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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
76
total RNA-seq
19
ATAC-seq
7
DNase-seq
4
single cell RNA-seq
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
80
DNA binding
80
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
46
histone
46
histone modification
24
broad histone mark
23
transcription factor
21
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
68
February, 2021
17
June, 2019
13
February, 2023
6
July, 2019
6
November, 2020
4
August, 2021
3
October, 2019
2
April, 2018
2
July, 2018
1
May, 2021
Available data
150
bam
145
bigWig
76
tsv
62
bed narrowPeak
57
fastq
20
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
190
Homo sapiens
Biosample type
96
in vitro differentiated cells
59
tissue
35
primary cell
Organ
865
pancreas
788
liver
679
connective tissue
adipose tissue
444
epithelium
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
190
AMP
Genome assembly (visualization)
162
hg19
142
GRCh38
Lab
186
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
zippedFastqFolder
organ_slims!
adipose tissue
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
67
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
tissue
bone tissue
58
islet of Langerhans
1
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 5 more…
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