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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1472
total RNA-seq
446
ATAC-seq
305
single cell RNA-seq
203
DNase-seq
87
RNA microarray
63
snATAC-seq
56
pCHi-C
32
WGBS
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
3
February, 2023
2
July, 2019
1
August, 2017
1
November, 2018
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
Organism
7
Homo sapiens
Biosample type
4
tissue
3
cell line
Organ
2
pancreas
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
1
vein
Project
4
AMP
3
T1D
Genome assembly (visualization)
4
hg19
Lab
4
AMP-T2D consortium
3
Kyle Gaulton, UCSD
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
7 results
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FAIRE-seq
CRISPR genome editing followed by DNA sequencing
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
cell line
EndoC_BH1
3
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