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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
41
total RNA-seq
18
small RNA-seq
15
RRBS
10
WGBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
74
DNA binding
62
Transcription
25
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
66
May, 2022
61
November, 2019
60
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
149
bam
122
bigWig
62
tsv
60
fastq
50
bed narrowPeak
47
bigBed narrowPeak
22
bed bedMethyl
22
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
173
Homo sapiens
Biosample type
144
tissue
29
primary cell
Organ
59
pancreas
41
connective tissue
35
adipose tissue
25
heart
18
brain
15
epithelium
12
vasculature
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
173
AMP
Genome assembly (visualization)
129
hg19
118
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
1
4
2
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 17 more…
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