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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
263
ChIP-seq
247
total RNA-seq
161
ATAC-seq
132
single cell RNA-seq
35
snATAC-seq
26
DNase-seq
17
pCHi-C
9
RRBS
7
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
381
Transcription
263
DNA binding
223
DNA accessibility
16
DNA methylation
7
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
57
August, 2017
48
February, 2021
48
July, 2018
46
June, 2019
43
April, 2018
40
September, 2020
34
October, 2019
24
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
586
bigWig
585
bam
398
fastq
277
bed narrowPeak
267
tsv
zippedFastqFolder
100
tagAlign
91
bigBed narrowPeak
36
bed broadPeak
36
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
907
Homo sapiens
Biosample type
2418
tissue
907
primary cell
345
in vitro differentiated cells
301
cell line
10
stem cell
Organ
321
epithelium
266
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
531
AMP
204
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
600
hg19
516
GRCh38
Lab
496
AMP-T2D consortium
239
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
zippedFastqFolder
organ_slims!
brain
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
907 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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