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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
33
single cell RNA-seq
27
snATAC-seq
6
WGBS
3
Hi-C
Assay category
125
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
37
September, 2020
3
October, 2022
Available data
169
fastq
zippedFastqFolder
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
161
Homo sapiens
Biosample type
161
primary cell
Organ
62
epithelium
62
pancreas
Project
161
HPAP
Genome assembly (visualization)
3
hg19
Lab
1052
AMP-T2D consortium
161
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
123
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
30
audit script error
files.file_type!
zippedFastqFolder
bigWig
organ_slims!
large intestine
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
6
1
exocrine cell
39
pancreatic beta cell
11
1
pancreatic acinar cell
1
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