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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
total RNA-seq
Assay category
15
DNA binding
3
DNA accessibility
2
3D chromatin structure
1
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
control
Date released
19
October, 2019
1
February, 2020
1
March, 2020
Available data
18
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
21
Homo sapiens
Biosample type
20
primary cell
1
tissue
Organ
813
pancreas
683
liver
649
connective tissue
467
adipose tissue
414
epithelium
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
zippedFastqFolder
target.investigated_as!
control
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
total RNA-seq
primary cell
endothelial cell of umbilical vein
15
2
2
1
tissue
C1 segment of cervical spinal cord
1
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