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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
237
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
44
August, 2017
43
April, 2018
43
June, 2019
23
October, 2019
22
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
September, 2020
2
February, 2021
2
October, 2018
Available data
603
bigWig
599
bam
404
fastq
285
bed narrowPeak
270
tsv
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
603
Homo sapiens
Biosample type
1745
tissue
603
primary cell
459
cell line
253
in vitro differentiated cells
3
stem cell
Organ
226
epithelium
192
pancreas
31
connective tissue
27
vasculature
26
kidney
23
blood vessel
17
brain
15
vein
11
liver
11
musculature of body
9
heart
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
413
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
586
hg19
510
GRCh38
Lab
378
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
zippedFastqFolder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
603 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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