Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
27
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
65
Transcription
27
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
RNA binding protein
4
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
64
March, 2020
60
November, 2019
49
April, 2018
47
September, 2023
40
September, 2020
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
296
bam
291
bigWig
213
bed narrowPeak
208
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
322
Homo sapiens
Biosample type
240
tissue
82
primary cell
Organ
91
kidney
59
heart
53
musculature of body
48
brain
37
limb
35
connective tissue
31
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
7
eye
5
artery
2
pericardium
Project
322
AMP
Genome assembly (visualization)
285
GRCh38
274
hg19
Lab
322
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
files.file_type!
zippedFastqFolder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
322 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 50 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
4
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
2
1
cardiac muscle cell
1
2
1
+ See 28 more…
See all biosamples
Download