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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
42
ChIP-seq
8
ATAC-seq
Assay category
195
DNA accessibility
42
DNA binding
Target of assay
31
histone
31
histone modification
18
broad histone mark
13
narrow histone mark
11
control
RNA binding protein
4
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
64
March, 2020
60
November, 2019
49
April, 2018
47
September, 2023
40
September, 2020
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
229
bam
220
bigWig
218
bed narrowPeak
212
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
17
fastq
14
tagAlign
Organism
237
Homo sapiens
Biosample type
186
tissue
51
primary cell
Organ
80
kidney
46
brain
43
musculature of body
34
heart
32
limb
18
connective tissue
18
epithelium
18
ureter
9
pancreas
7
vasculature
6
eye
5
blood vessel
2
adipose tissue
2
artery
2
liver
1
spleen
Project
237
AMP
Genome assembly (visualization)
220
GRCh38
196
hg19
Lab
236
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
24
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
zippedFastqFolder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
237 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
mesenchymal stem cell
7
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 17 more…
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