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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
54
histone
54
histone modification
35
transcription factor
29
narrow histone mark
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
34
August, 2017
15
September, 2018
10
November, 2017
3
November, 2018
1
December, 2017
1
October, 2017
Available data
64
bam
64
fastq
62
bigWig
29
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
64
Homo sapiens
Biosample type
23
primary cell
22
tissue
13
cell line
6
in vitro differentiated cells
Organ
32
pancreas
17
connective tissue
13
liver
12
adipose tissue
11
epithelium
1
brain
1
embryo
Project
64
AMP
Genome assembly (visualization)
62
hg19
55
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
64
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
files.file_type!
zippedFastqFolder
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
tissue
white adipose tissue
12
islet of Langerhans
9
brain
1
cell line
HepG2
13
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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