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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
427
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
307
November, 2017
53
December, 2017
53
November, 2018
21
August, 2017
5
January, 2019
1
December, 2018
Available data
652
bam
592
bigWig
440
fastq
412
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
440
Homo sapiens
Biosample type
359
cell line
73
tissue
8
in vitro differentiated cells
Organ
440
liver
419
pancreas
234
epithelium
89
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
23
embryo
20
spleen
15
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
440
AMP
Genome assembly (visualization)
365
hg19
319
GRCh38
Lab
440
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
files.file_type!
zippedFastqFolder
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
440 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
352
5
1
1
tissue
liver
60
2
1
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
8
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