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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
116
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
90
February, 2021
74
November, 2017
22
October, 2019
14
November, 2019
9
January, 2019
8
August, 2021
5
March, 2020
5
May, 2021
4
November, 2018
2
December, 2018
Available data
233
bam
166
bigWig
119
tsv
90
fastq
52
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
233
Homo sapiens
Biosample type
1814
tissue
598
primary cell
254
in vitro differentiated cells
233
cell line
3
stem cell
Organ
81
liver
62
artery
62
blood vessel
62
heart
62
pancreas
62
vasculature
50
epithelium
9
blood
9
bodily fluid
8
embryo
8
kidney
Project
229
AMP
4
T1D
Genome assembly (visualization)
168
hg19
154
GRCh38
Lab
233
AMP-T2D consortium
Audit category:
54
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
FAIRE-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
74
5
1
1
smooth muscle cell of the coronary artery
2
52
8
EndoC_BH1
14
33
1
Panc1
13
1
GM12878
9
H1-hESC
8
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
RCC 7860 vector
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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