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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
104
total RNA-seq
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
465
DNA binding
104
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
86
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
14
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
572
bam
519
bigWig
427
fastq
394
bed narrowPeak
355
bigBed narrowPeak
118
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
572
Homo sapiens
Biosample type
1843
tissue
572
cell line
525
primary cell
274
in vitro differentiated cells
3
stem cell
Organ
365
liver
62
pancreas
60
blood
60
bodily fluid
58
artery
58
blood vessel
58
heart
58
vasculature
50
epithelium
15
kidney
8
embryo
Project
568
AMP
4
T1D
Genome assembly (visualization)
499
hg19
453
GRCh38
Lab
572
AMP-T2D consortium
Audit category:
61
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
572 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
GM12878
60
smooth muscle cell of the coronary artery
6
52
EndoC_BH1
15
33
Panc1
13
1
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