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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
242
DNA binding
85
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
56
August, 2017
48
July, 2018
43
April, 2018
31
June, 2019
29
October, 2019
18
July, 2019
9
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
584
bigWig
580
bam
408
fastq
270
tsv
266
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
580
Homo sapiens
Biosample type
1730
tissue
580
cell line
580
primary cell
290
in vitro differentiated cells
3
stem cell
Organ
226
epithelium
194
pancreas
30
connective tissue
26
vasculature
23
blood vessel
21
kidney
18
vein
12
brain
12
musculature of body
10
liver
9
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
400
AMP
180
T1D
Genome assembly (visualization)
552
hg19
498
GRCh38
Lab
400
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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