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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
459
DNA binding
52
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
345
transcription factor
89
recombinant protein
74
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
61
November, 2018
29
February, 2021
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
516
bam
466
bigWig
427
fastq
392
bed narrowPeak
355
bigBed narrowPeak
67
tsv
59
bed broadPeak
59
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
516
Homo sapiens
Biosample type
1771
tissue
596
primary cell
516
cell line
290
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
512
AMP
4
T1D
Genome assembly (visualization)
445
hg19
399
GRCh38
Lab
516
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
organ_slims!
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BIOSAMPLE
ASSAY
516 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
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