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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
755
histone modification
754
histone
475
transcription factor
390
narrow histone mark
363
broad histone mark
294
control
100
RNA binding protein
82
recombinant protein
36
chromatin remodeller
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
36
bam
36
bed narrowPeak
36
bigWig
36
fastq
34
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
36
Homo sapiens
Biosample type
30
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
23
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
36
AMP
Genome assembly (visualization)
36
hg19
34
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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