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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
6
total RNA-seq
5
FAIRE-seq
2
DNase-seq
1
WGBS
1
pCHi-C
Assay category
DNA binding
71
DNA accessibility
6
Transcription
1
DNA methylation
Date released
45
May, 2020
24
May, 2022
3
August, 2017
3
July, 2019
1
February, 2021
1
March, 2019
1
November, 2018
1
October, 2019
Available data
202
fastq
200
tsv
161
txt
153
zippedFastqFolder
103
bigWig
79
bam
77
bed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
10
bed bed3
10
bigBed narrowPeak
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
bed broadPeak
2
ibed
1
bedpe
1
bigBed broadPeak
1
tar
1
vcf
Organism
79
Homo sapiens
Biosample type
49
primary cell
30
tissue
Organ
27
pancreas
2
blood vessel
2
vasculature
1
brain
1
connective tissue
1
epithelium
1
kidney
1
vein
Project
79
AMP
Genome assembly (visualization)
1764
hg19
GRCh38
Lab
54
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
assembly!
GRCh38
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
total RNA-seq
FAIRE-seq
DNase-seq
WGBS
pCHi-C
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 23 more…
tissue
islet of Langerhans
19
6
1
aorta
1
frontal cortex
1
kidney
1
pancreas
1
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