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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
165
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
93
histone modification
92
histone
46
broad histone mark
45
narrow histone mark
41
transcription factor
31
control
8
RNA binding protein
1
chromatin remodeller
Date released
572
February, 2021
371
November, 2017
283
May, 2020
277
May, 2021
266
August, 2017
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
83
December, 2017
82
July, 2019
82
November, 2018
79
April, 2019
75
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
37
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
271
fastq
266
bam
256
bigWig
126
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
259
Homo sapiens
Biosample type
165
tissue
53
primary cell
48
in vitro differentiated cells
Organ
160
pancreas
65
connective tissue
25
epithelium
25
liver
17
adipose tissue
Project
266
AMP
Genome assembly (visualization)
236
hg19
233
GRCh38
Lab
266
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
266 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
24
white adipose tissue
12
pancreas
10
adipose tissue
2
2
+ See 2 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
47
1
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