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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
439
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
439
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
334
transcription factor
88
recombinant protein
76
control
58
RNA binding protein
24
histone
24
histone modification
19
chromatin remodeller
12
broad histone mark
12
narrow histone mark
2
other context
2
other post-translational modification
Date released
293
November, 2017
95
February, 2021
56
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
556
Homo sapiens
Biosample type
1901
tissue
604
primary cell
556
cell line
274
in vitro differentiated cells
1
stem cell
Organ
340
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
552
AMP
4
T1D
Genome assembly (visualization)
483
hg19
441
GRCh38
Lab
556
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
556 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
333
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
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