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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
46
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
99
Transcription
46
DNA binding
12
DNA accessibility
Target of assay
19
histone
19
histone modification
14
control
13
transcription factor
10
broad histone mark
9
narrow histone mark
7
recombinant protein
1
RNA binding protein
Date released
95
February, 2021
29
October, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
582
bam
522
bigWig
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
157
Homo sapiens
Biosample type
1537
tissue
372
primary cell
157
cell line
155
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
51
epithelium
15
kidney
8
embryo
1
liver
Project
153
AMP
4
T1D
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
157
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
33
15
1
Panc1
13
1
H1-hESC
8
RCC 7860 HIF1a re-expression
1
4
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