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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
151
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
109
transcription factor
30
RNA binding protein
23
recombinant protein
20
control
20
histone
20
histone modification
15
chromatin remodeller
10
broad histone mark
10
narrow histone mark
Date released
November, 2017
95
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
268
bam
254
bigWig
155
bed narrowPeak
119
tsv
112
fastq
106
bigBed narrowPeak
8
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
268
Homo sapiens
Biosample type
1838
tissue
600
primary cell
291
in vitro differentiated cells
268
cell line
3
stem cell
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
52
liver
51
epithelium
15
kidney
8
embryo
Project
264
AMP
4
T1D
Genome assembly (visualization)
246
GRCh38
243
hg19
Lab
268
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
268 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
HepG2
45
5
1
1
EndoC_BH1
15
33
1
Panc1
13
1
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