Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
463
ChIP-seq
102
total RNA-seq
10
ATAC-seq
DNase-seq
1
WGBS
Assay category
463
DNA binding
102
Transcription
10
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
33
histone
33
histone modification
30
chromatin remodeller
18
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
27
December, 2018
27
October, 2019
23
January, 2019
15
November, 2019
8
August, 2021
4
May, 2021
2
March, 2020
Available data
576
bam
516
bigWig
427
fastq
400
bed narrowPeak
353
bigBed narrowPeak
117
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
576
Homo sapiens
Biosample type
1728
tissue
576
cell line
400
primary cell
290
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
58
pancreas
46
epithelium
14
kidney
8
embryo
Project
576
AMP
4
T1D
Genome assembly (visualization)
503
hg19
457
GRCh38
Lab
576
AMP-T2D consortium
Audit category:
58
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
576 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
13
31
1
Panc1
13
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
early embryonic cell
2
iPSC derived cell line
2
glomerular visceral epithelial cell
1
See all biosamples
Download