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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
463
ChIP-seq
102
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
463
DNA binding
102
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
33
histone
33
histone modification
30
chromatin remodeller
18
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
30
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
8
August, 2021
4
May, 2021
2
March, 2020
Available data
578
bam
518
bigWig
427
fastq
402
bed narrowPeak
355
bigBed narrowPeak
117
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
579
Homo sapiens
Biosample type
1905
tissue
579
cell line
433
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
60
pancreas
47
epithelium
15
kidney
8
embryo
Project
579
AMP
4
T1D
Genome assembly (visualization)
506
hg19
460
GRCh38
Lab
579
AMP-T2D consortium
Audit category:
58
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
579 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
13
31
1
Panc1
13
1
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
2
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