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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
479
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
479
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
360
transcription factor
89
recombinant protein
76
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
95
February, 2021
61
November, 2018
29
October, 2019
27
December, 2018
23
January, 2019
22
August, 2021
15
November, 2019
5
March, 2020
5
May, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
596
Homo sapiens
Biosample type
2076
tissue
639
primary cell
596
cell line
295
in vitro differentiated cells
3
stem cell
Organ
380
liver
66
artery
66
blood vessel
66
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
592
AMP
4
T1D
Genome assembly (visualization)
523
hg19
463
GRCh38
Lab
582
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
596 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
373
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
2
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